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Geant4 8.1p1 (by Geant4 Development Team)

Ghemical 2.01 (by TH)
Ghemical is a computational chemistry software package released under the GNU GPL

Bioinformatics Benchmark System 3 (by Joe Landman)
The Bioinformatics Benchmark System is an attempt to build a reasonable testing framework, tests, and data, to enable end users and v

E-Cell System 3.1.105 (by Kouichi Takahashi)
E-Cell System is a concept of constructing virtual cells on computers.

E-Cell System is an object-oriented software suite for mode

PerlPrimer 1.1.14 (by Owen Marshall)
PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PC

Isotopic Pattern Calculator 1.4 (by Dirk Nolting)
IPC is a program that calculates the isotopic distribution of a given chemical formula

ploticus 2.33 (by Steve Grubb)
ploticus is a free, GPL, non-interactive software package for producing plots, charts, and graphics from data

BioJava 1.30 (by Thomas Down)
BioJava is an open-source project dedicated to providing a Java framework for processing biological data

CLC Free Workbench 3.1 (by CLC bio A/S)

BALLView 1. Beta 2 (by Andreas Moll)

NSCL SpecTcl 3.1-pre3 (by Ron Fox)
SpecTcl (pronounced Spectacle) is a powerful nuclear event data analysis too

PDBCat 1.3 (by Andrew Dalke)
PDBCat can be used to manipulate and process PDB files using commonly available tools such as Perl, awk, etc.

Written by Andrew Da

Array Designer 4.11 (by PREMIER Biosoft International)
Array Designer project can help design thousands of efficient, highly specific oligos to make microarrays for SNP genotyping and expr

JOELib/JOELib2 2006-07-25 (by Joerg K. Wegner)

pyNetConv 0.12 (by M?rcio Rosa da Silva)
pyNetConv is a Python library created to help the conversion of some network file formats.

Since version 0.6, pyNetConv is capable

CoaSim 4.1.0 (by Thomas Mailund)
CoaSim is a tool for simulating the coalescent process with recombination and geneconversion under various demographic models.

CoaSi

Geneious 2.5.3 (by Biomatters Ltd.)
Geneious project is a unique, easy to use software system that greatly speeds up and simplifies research in molecular biology and bio

Mauve 1.3.0 (by Aaron Darling)
Mauve project is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events

SIBsim4 0.14 (by Christian Iseli)
SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing fo

Bioclipse 1.0 (by Bioclipse Team)
Bioclipse is a rich-client platform chemistry and biology workbench

CLC Gene Workbench 2.1 (by CLC bio A/S)

Single Marker Association 2.0 (by Thomas Mailund)
Single Marker Association is a simple tool that calculates the single marker association between individual SNP markers and a case/co

Quick-Join 1.0.6 (by Thomas Mailund)
QuickJoin project implements a heuristic for speeding up neighbour joining, making neighbour joining feasible for large sets of taxa

Plasmidb 0.6 (by Mark Brooks)
Plasmidb project is a interface to a simple MySQL database, which itself contains information about projects in molecular biology.

Python Macromolecular Library 0.98 (by Jay Painter)
Python Macromolecular Library (mmLib) is a software toolkit and library of routines for the analysis and manipulation of macromolecul