Bio::Map::CytoMap 1.4 review
DownloadBio::Map::CytoMap is a Bio::MapI compliant map implementation handling cytogenic bands. SYNOPSIS use Bio::Map::CytoMap;
|
|
Bio::Map::CytoMap is a Bio::MapI compliant map implementation handling cytogenic bands.
SYNOPSIS
use Bio::Map::CytoMap;
my $map = new Bio::Map::CytoMap(-name => 'human1',
-species => $human);
foreach my $marker ( @markers ) { # get a list of markers somewhere
$map->add_element($marker);
}
This is the simple implementation of cytogenetic maps based on Bio::Map::MapI. It handles the essential storage of name, species, type, and units as well as in memory representation of the elements of a map.
For CytoMaps type is hard coded to be 'cytogeneticmap' and units are set to '' but can be set to something else.
Requirements:
Perl
Bio::Map::CytoMap 1.4 keywords