Bio::Ontology::GOterm 1.4 review
DownloadBio::Ontology::GOterm is a representation of GO terms. SYNOPSIS $term = Bio::Ontology::GOterm->new ( -go_id => "GO
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Bio::Ontology::GOterm is a representation of GO terms.
SYNOPSIS
$term = Bio::Ontology::GOterm->new
( -go_id => "GO:0016847",
-name => "1-aminocyclopropane-1-carboxylate synthase",
-definition => "Catalysis of ...",
-is_obsolete => 0,
-comment => "" );
$term->add_definition_references( @refs );
$term->add_secondary_GO_ids( @ids );
$term->add_aliases( @aliases );
foreach my $dr ( $term->each_definition_reference() ) {
print $dr, "n";
}
# etc.
This is "dumb" class for GO terms (it provides no functionality related to graphs). Implements Bio::Ontology::TermI.
Requirements:
Perl
Bio::Ontology::GOterm 1.4 search tags