Bio::OntologyIO::simplehierarchy 1.4 review
DownloadBio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats. SYNOPSIS use Bio::O
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Bio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats.
SYNOPSIS
use Bio::OntologyIO;
# do not use directly -- use via Bio::OntologyIO
my $parser = Bio::OntologyIO->new
( -format => "simplehierarchy",
-file => "pathology_terms.csv",
-indent_string => ",",
-ontology_name => "eVOC",
-term_factory => $fact,
);
my $ontology = $parser->next_ontology();
Needs Graph.pm from CPAN. This class is nearly identical to OntologyIO::dagflat, see Bio::OntologyIO::dagflat for details.
Requirements:
Perl
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