Bio::Tools::Run::PiseApplication::freak 1.4 review

License: GPL (GNU General Public License) File size: 811K Developer: Institut Pasteur & Catherine Letondal

0

Bio::Tools::Run::PiseApplication::freak is a Perl module.

Bio::Tools::Run::PiseApplication::freak
Bioperl class for:

FREAK Residue/base frequency table or plot (EMBOSS)


Parameters:

(see also:
http://bioweb.pasteur.fr/seqanal/interfaces/freak.html
for available values):


freak (String)

init (String)

seqall (Sequence)
seqall -- any [sequences] (-seqall)
pipe: seqsfile

letters (String)
Residue letters (-letters)

step (Integer)
Stepping value (-step)

window (Integer)
Averaging window (-window)

plot (Switch)
Produce graphic (-plot)

graph (Excl)
graph (-graph)

outfile (OutFile)
outfile (-outfile)

auto (String)

psouput (String)

Requirements:
Perl